Structural Classification of Proteins
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Superfamily: HRDC-like

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: SAM domain-like [47768]
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. Superfamily: HRDC-like [47819]

Families:

  1. HRDC domain from helicases [47820] (3)
    1. HRDC domain from RecQ helicase [47821]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [47822] (1) picpic
      2. Escherichia coli [TaxId: 562] [140639] (3) picpic
    2. Werner syndrome ATP-dependent helicase, WRN [140640]
      1. Human (Homo sapiens) [TaxId: 9606] [140641] (3) picpic
  2. RNA polymerase II subunit RBP4 (RpoF) [69044] (3)
    1. RNA polymerase II subunit RBP4 (RpoF) [69045]
      includes the N-terminal heterodimerisation alpha-hairpin
      1. Archaeon Methanococcus jannaschii [TaxId: 2190] [69046] (1) picpic
      2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [116939] (1) picpic
      3. Human (Homo sapiens) [TaxId: 9606] [140642] (4) picpic
  3. RNase D C-terminal domains [140643] (1)
    tandem repeat of two domains of this fold, the first domain belongs to Pfam 00570
    1. Ribonuclease D [140644]
      1. Escherichia coli [TaxId: 562] [140645] (2) picpic
  4. EXOSC10 HRDC domain-like [140646] (2)
    1. Exosome complex exonuclease RRP6 domain [140647]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [140648] (4) picpic
    2. Exosome component 10, EXOSC10 [140649]
      1. Human (Homo sapiens) [TaxId: 9606] [140650] (1) picpic
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MRC site Generated from scop database 1.73 with scopm 1.101 on Wed Nov 21 11:18:32 2007
Copyright © 1994-2007 The scop authors / scop@mrc-lmb.cam.ac.uk