Structural Classification of Proteins
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Protein: Immunoglobulin light chain kappa variable domain, VL-kappa from Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Immunoglobulin-like beta-sandwich [48725]
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily: Immunoglobulin [48726]
  5. Family: V set domains (antibody variable domain-like) [48727]
  6. Protein: Immunoglobulin light chain kappa variable domain, VL-kappa [88519]
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. Species: Mouse (Mus musculus), cluster 4 [TaxId: 10090] [88531]

PDB Entry Domains:

  1. 1mqk picpicxref
    part of Fv against Paracoccus denitrificans cytochrome c oxidase
    1. chain l [85054] picpiclink
  2. 1mex picpicxrefxrefxref
    part of Fab 29g12
    complexed with rac
    1. region l:1-107 [91259] picpiclink
  3. 1a2y picpicxrefxref
    part of Fv D1.3
    complexed with po4; mutant
    1. chain a [19926] picpiclink
  4. 1c5c picpicxrefxrefxref
    part of humanized catalytic Fab 21D8 with a decarboxylase activity
    complexed with gol, tk4
    1. region l:1-107 [20474] picpiclink
  5. 1um5 picpicxrefxrefxref
    complexed with ss1
    1. region l:2-109 [113304] picpiclink
  6. 1uac picpicxrefxref
    part of Fv HyHEL-10
    mutant
    1. chain l [99133] picpiclink
  7. 1vfa picpicxref
    part of Fv D1.3
    1. chain a [19928] picpiclink
  8. 1vfb picpicxrefxref
    part of Fv D1.3
    1. chain a [19930] picpiclink
  9. 1g7j picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain a [19932] picpiclink
  10. 1i8k picpicxref
    part of dsFv MR1; complex with a EGFR-VIII peptide
    mutant
    1. chain a [71130] picpiclink
  11. 1p7k picpicxrefxrefxref
    part of anti-ssDNA Fab
    complexed with 1pe, epe, gol, peg, so4
    1. region l:1-107 [94293] picpiclink
    2. region a:1-107 [94287] picpiclink
  12. 2dqd picpicxref
    automatically matched to d3hfml1
    mutant
    1. region l:1-107 [131621] picpiclink
  13. 1j1o picpicxrefxref
    part of Fv HyHEL-10
    mutant
    1. chain l [77058] picpiclink
  14. 1j1x picpicxrefxref
    part of Fv HyHEL-10
    mutant
    1. chain l [77064] picpiclink
  15. 1j1p picpicxrefxref
    part of Fv HyHEL-10
    mutant
    1. chain l [77061] picpiclink
  16. 2dqc picpicxref
    automatically matched to d3hfml1
    mutant
    1. region l:1-107 [131619] picpiclink
  17. 2dqj picpicxrefxref
    automatically matched to d3hfml1
    1. region l:1-107 [131636] picpiclink
  18. 1kcv picpicxrefxrefxref
    part of anti-hepatitis B Fab pc282
    1. region l:1-107 [72317] picpiclink
  19. 1nby picpicxrefxrefxrefxref
    part of anti-lysozyme Fab HYHEL-63
    mutant
    1. region a:1-107 [85536] picpiclink
  20. 1dqq picpicxrefxrefxref
    part of anti-lysozyme Fab HYHEL-63
    1. region a:1-107 [20420] picpiclink
    2. region c:1-107 [20422] picpiclink
  21. 1g7i picpicxrefxref
    part of Fv D1.3
    complexed with po4; mutant
    1. chain a [19934] picpiclink
  22. 1kiq picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain a [19938] picpiclink
  23. 1g7m picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain a [19936] picpiclink
  24. 1fns picpicxrefxrefxrefxref
    part of Fab NMC-4 blocking the von willebrand factor (vwf) a1 domain function
    mutant
    1. region l:1-107 [20288] picpiclink
  25. 1wej picpicxrefxrefxrefxref
    part of anti-cytochrome c Fab E8
    complexed with ace, hem, zn
    1. region l:1-107 [20360] picpiclink
  26. 1n7m picpicxrefxrefxref
    part of metal chelatase catalytic Fab 7G12; germline antibody; chain identifiers are probably mixed up
    complexed with mmp
    1. region h:1-107 [80252] picpiclink
  27. 1um4 picpicxrefxrefxref
    complexed with sh4
    1. region l:2-109 [113300] picpiclink
  28. 2adf picpicxrefxrefxref
    automatically matched to d1a0ql1
    complexed with acy, gol, so4
    1. region l:2-107 [126586] picpiclink
  29. 2dqe picpicxref
    automatically matched to d3hfml1
    mutant
    1. region l:1-107 [131623] picpiclink
  30. 1ndg picpicxrefxrefxrefxref
    a part of Fab HYHEL-8, L chain is identical to HYHEL-63
    complexed with acy; mutant
    1. region a:1-107 [85576] picpiclink
  31. 1r3j picpicxrefxrefxrefxref
    part of Fab against potassium channel KcsA
    complexed with dga, f09, tl; mutant
    1. region a:1-107 [96928] picpiclink
  32. 1a7n picpicxref
    part of Fv D1.3
    mutant
    1. chain l [19940] picpiclink
  33. 1xiw picpicxrefxrefxref
    1. chain c [115369] picpiclink
    2. chain g [115373] picpiclink
  34. 1g7h picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain a [19948] picpiclink
  35. 1a7r picpicxref
    part of Fv D1.3
    mutant
    1. chain l [19944] picpiclink
  36. 1nbz picpicxrefxrefxrefxref
    part of anti-lysozyme Fab HYHEL-63
    mutant
    1. region a:1-107 [85541] picpiclink
  37. 1kir picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain a [19946] picpiclink
  38. 1a7o picpicxref
    part of Fv D1.3
    mutant
    1. chain l [19942] picpiclink
  39. 1dvf picpicxrefxref
    part of Fv E5.2, anti-idiotopic antibody to D1.3
    CASP1
    complexed with zn
    1. chain c [20106] picpiclink
  40. 1jfq picpicxrefxrefxref
    part of Fab 36-71
    1. region l:1-108 [66648] picpiclink
  41. 1a7p picpicxref
    part of Fv D1.3
    complexed with acy; mutant
    1. chain l [19950] picpiclink
  42. 1a7q picpicxref
    part of Fv D1.3
    mutant
    1. chain l [19954] picpiclink
  43. 1dvf picpicxrefxref
    part of Fv D1.3
    CASP1
    complexed with zn
    1. chain a [19952] picpiclink
  44. 1ua6 picpicxrefxref
    part of Fv HyHEL-10
    mutant
    1. chain l [99130] picpiclink
  45. 1um6 picpicxrefxrefxref
    1. region l:2-109 [113308] picpiclink
  46. 1e4w picpicxrefxrefxref
    part of anti-TGFalpha Fab TAB2
    complexed with cl, ni
    1. region l:1-107 [59234] picpiclink
  47. 1k4c picpicxrefxrefxrefxref
    part of Fab against potassium channel KcsA
    complexed with dga, f09, k; mutant
    1. region b:1-107 [68128] picpiclink
  48. 1h8n picpicxref
    part of anti-ampicillin scFv
    complexed with gol, so4; mutant
    1. region a:3-109 [60783] picpiclink
  49. 1kip picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain a [19956] picpiclink
  50. 1g7l picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain a [19958] picpiclink
  51. 1p2c picpicxrefxrefxrefxref
    part of anti-lysozyme Fab F10.6.6
    1. region a:1-107 [93915] picpiclink
    2. region d:901-1007 [93920] picpiclink
  52. 1osp picpicxrefxrefxrefxref
    part of Fab 184.1 against OspA
    mutant
    1. region l:1-107 [20116] picpiclink
  53. 1dqj picpicxrefxrefxrefxref
    part of anti-lysozyme Fab HYHEL-63
    1. region a:1-107 [20424] picpiclink
  54. 12e8 picpicxrefxrefxref
    part of Fab 2E8 specific to the low density lipoprotein receptor binding region of apolipoprotein E
    1. region l:1-107 [20268] picpiclink
    2. region m:1-107 [20270] picpiclink
  55. 1bm3 picpicxrefxrefxref
    part of anti-integrin Fab OPG2
    1. region l:1-107 [20066] picpiclink
  56. 1ic7 picpicxrefxref
    part of Fv HyHEL-10
    mutant
    1. chain l [62259] picpiclink
  57. 1jgl picpicxrefxrefxref
    part of anti-estradiol Fab 57-2
    complexed with est
    1. region l:1-107 [66681] picpiclink
  58. 6fab picpicxrefxrefxref
    part of Fab 36-71
    1. region l:1-108 [19908] picpiclink
  59. 1c5b picpicxrefxrefxref
    part of humanized catalytic Fab 21D8 with a decarboxylase activity
    1. region l:1-107 [20476] picpiclink
  60. 1d5i picpicxrefxrefxref
    part of humanized oxy-cope catalytic Fab az-28
    1. region l:1-107 [20194] picpiclink
  61. 1fe8 picpicxrefxrefxrefxref
    part of Fab RU5 inhibiting the collagen binding by the von willebrand factor a3 domain
    complexed with cac, fuc, nag
    1. region l:1-107 [59792] picpiclink
    2. region m:1-107 [59794] picpiclink
    3. region n:1-107 [59796] picpiclink
  62. 1e4x picpicxrefxrefxref
    part of anti-TGFalpha Fab TAB2
    1. region l:1-107 [59240] picpiclink
    2. region m:1-107 [59242] picpiclink
  63. 1opg picpicxrefxrefxref
    part of anti-integrin Fab OPG2
    1. region l:1-107 [20068] picpiclink
  64. 1d6v picpicxrefxrefxref
    part of humanized oxy-cope catalytic Fab az-28
    1. region l:1-107 [20196] picpiclink
  65. 1gaf picpicxrefxrefxref
    part of humanized Fab 48G7
    complexed with npe
    1. region l:1-109 [20082] picpiclink
  66. 1i8m picpicxrefxrefxref
    part of anti-ssDNA Fab
    complexed with so4
    1. region l:1-107 [66088] picpiclink
    2. region a:1-107 [66082] picpiclink
  67. 1ndm picpicxrefxrefxrefxref
    a part of Fab HYHEL-26, L chain is identical to HYHEL-63
    mutant
    1. region a:1-107 [85581] picpiclink
  68. 2rcs picpicxrefxrefxref
    part of humanized Fab 48G7
    1. region l:1-109 [20086] picpiclink
  69. 1aj7 picpicxrefxrefxref
    part of humanized Fab 48G7
    complexed with npe
    1. region l:1-109 [20084] picpiclink
  70. 1dzb picpicxrefxref
    part of anti-lysozyme scFv 1F9
    1. region a:201-307 [20489] picpiclink
    2. region b:201-307 [20491] picpiclink
  71. 1s5h picpicxrefxrefxrefxref
    complexed with dga, f09, k; mutant
    1. region a:1-107 [105267] picpiclink
  72. 1i8i picpicxref
    part of dsFv MR1; complex with a EGFR-VIII peptide
    mutant
    1. chain a [71128] picpiclink
  73. 1ic5 picpicxrefxref
    part of Fv HyHEL-10
    mutant
    1. chain l [62255] picpiclink
  74. 1mlb picpicxrefxrefxref
    part of Fab D44.1
    1. region a:1-108 [20050] picpiclink
  75. 1k4d picpicxrefxrefxrefxref
    part of Fab against potassium channel KcsA
    complexed with dga, f09, k, na; mutant
    1. region b:1-107 [68133] picpiclink
  76. 1emt picpicxrefxrefxref
    part of anti-C60 fullerene Fab
    1. region l:1-107 [20482] picpiclink
  77. 1mlc picpicxrefxrefxrefxref
    part of Fab D44.1
    1. region a:1-108 [20052] picpiclink
    2. region c:1-108 [20054] picpiclink
  78. 1oak picpicxrefxrefxrefxref
    part of Fab NMC-4 blocking the von willebrand factor (vwf) a1 domain function
    1. region l:1-107 [20290] picpiclink
  79. 1kcu picpicxrefxrefxref
    part of anti-hepatitis B Fab pc287
    1. region l:1-107 [72313] picpiclink
  80. 1ct8 picpicxrefxrefxref
    part of catalytic Fab 7C8
    1. region a:1-107 [20408] picpiclink
    2. region c:1-107 [20410] picpiclink
  81. 1i3g picpicxref
    part of anti-ampicillin scFv
    complexed with mpd
    1. chain l [66019] picpiclink
  82. 1qbl picpicxrefxrefxref
    part of anti-cytochrome c Fab E8