Protein: Immunoglobulin heavy chain variable domain, VH from Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]

Lineage:

1. Root: scop
2. Class: All beta proteins [48724]
3. Fold: Immunoglobulin-like beta-sandwich [48725]
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands
4. Superfamily: Immunoglobulin [48726]
5. Family: V set domains (antibody variable domain-like) [48727]
6. Protein: Immunoglobulin heavy chain variable domain, VH [88543]
   VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
7. Species: Mouse (Mus musculus), cluster 3.1 [TaxId: 10090] [88551]

PDB Entry Domains:

1. 1wej
   part of anti-cytochrome c Fab E8
   complexed with ace, hem, zn
   1. region h:1-112 [20361]
2. 1a3r
   part of Fab 8F5
   complexed with nh2
   1. region h:2-119 [19781]
3. 1dvf
   part of Fv E5.2, anti-idiotopic antibody to D1.3
   CASP1
   complexed with zn
   1. chain d [20107]
4. 1cr9
   part of anti-prion Fab 3F4
   1. region h:1-110 [20431]
5. 12e8
   part of Fab 2E8 specific to the low density lipoprotein receptor binding region of apolipoprotein E
   1. region h:1-114 [20269]
   2. region p:1-114 [20271]
6. 35c8
   part of catalytic Fab 5C8
   complexed with nox
   1. region h:1-113 [20297]
7. 1il1
   part of anti-HIV Fab G3-519
   1. region a:3-121 [62539]
8. 1gaf
   part of humanized Fab 48G7
   complexed with npe
   1. region h:1-114 [20083]
9. 1aj7
   part of humanized Fab 48G7
   complexed with npe
   1. region h:1-114 [20085]
10. 2rcs
    part of humanized Fab 48G7
    1. region h:1-114 [20087]
11. 1dzb
    part of anti-lysozyme scFv 1F9
    1. region a:1-117 [20488]
    2. region b:1-117 [20490]
12. 25c8
    part of catalytic Fab 5C8
    complexed with gep
    1. region h:1-113 [20299]
13. 1qbl
    part of anti-cytochrome c Fab E8
    1. region h:1-112 [20363]
14. 1qok
    part of anti-carcinoembryonic scFv MFE-23
    1. region a:27-147 [20492]
15. 1qbm
    part of anti-cytochrome c Fab E8
    1. region h:1-112 [20365]
16. 1hkl
    part of humanized Fab 48G7
    1. region h:1-114 [20089]
17. 15c8
    part of catalytic Fab 5C8
    1. region h:1-113 [20301]
18. 1k6q
    part of anti-human tissue factor Fab D3
    1. region h:1-117 [72092]
19. 1fgn
    part of anti-human tissue factor Fab 5G9
    1. region h:1-117 [20217]
20. 1cu4
    part of anti-prion Fab 3F4
    1. region h:3-110 [20433]
21. 2ap2
    part of P-glycoprotein-specific scFv C219
    1. chain b [20179]
    2. chain d [20181]
22. 1ap2
    part of P-glycoprotein-specific scFv C219
    1. chain b [20183]
    2. chain d [20185]
23. 1moe
    part of anti-CEA scFv T84.66; VL to VH linkage: linker residues 112-119; assembles as a diabody
    complexed with so4
    1. region a:120-240 [85031]
    2. region b:120-240 [85033]
24. 1txv
    complexed with ca, cac, gol, man, mg, nag
    1. region h:1-119 [112787]
25. 1ty3
    complexed with ca, cac, gol, man, mg, nag
    1. region h:1-119 [112798]
26. 1ty6
    complexed with ca, gol, hrg, man, mg, mpt, nag, nh2
    1. region h:1-119 [112814]
27. 1ty5
    complexed with agg, ca, gol, man, mg, nag
    1. region h:1-119 [112806]
28. 1bbd
    part of Fab 8F5
    complexed with so4
    1. region h:1-119 [19783]
29. 1jnl
    part of anti-estradiol Fab 17E12E5
    1. region h:1-114 [66956]
30. 1a5f
    part of an anti-E-selectin Fab
    1. region h:1-120 [20303]
31. 1jnn
    part of anti-estradiol Fab 17E12E5
    complexed with est
    1. region h:1-114 [66960]
32. 1ty7
    complexed with 180, ca, gol, man, mg, nag
    1. region h:1-119 [112822]
33. 1ahw
    part of anti-human tissue factor Fab 5G9
    1. region b:1-117 [20219]
    2. region e:1-117 [20221]
34. 2hh0
    mutant
    1. region h:1-149 [136462]

Generated from scop database 1.73 with scopm 1.101 on Wed Nov 21 11:18:32 2007 Copyright © 1994-2007 The scop authors / scop@mrc-lmb.cam.ac.uk