Protein: Immunoglobulin heavy chain variable domain, VH from Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Lineage:

1. Root: scop
2. Class: All beta proteins [48724]
3. Fold: Immunoglobulin-like beta-sandwich [48725]
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands
4. Superfamily: Immunoglobulin [48726]
5. Family: V set domains (antibody variable domain-like) [48727]
6. Protein: Immunoglobulin heavy chain variable domain, VH [88543]
   VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
7. Species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090] [88557]

PDB Entry Domains:

1. 1ncw
   part of cationic cyclization catalytic Fab 4C6
   complexed with bez, gol
   1. region h:1-113 [85555]
2. 1ruk
   part of cationic cyclization catalytic Fab 4C6
   complexed with act, bez, gol
   1. region h:1-113 [97859]
3. 1rup
   part of cationic cyclization catalytic Fab 4C6
   complexed with bez, gol
   1. region h:1-113 [97871]
4. 1rum
   part of cationic cyclization catalytic Fab 4C6
   complexed with 4ht, bez, gol
   1. region h:1-113 [97867]
5. 1kcv
   part of anti-hepatitis B Fab pc282
   1. region h:1-116 [72315]
6. 1rua
   part of cationic cyclization catalytic Fab 4C6
   complexed with 4ht, act, bez, ghg, gol
   1. region h:1-113 [97855]
7. 1f58
   part of anti-gp120 (HIV-1) Fab 58.2
   mutant
   1. region h:1-113 [20351]
8. 1rul
   part of cationic cyclization catalytic Fab 4C6
   complexed with 4ht, act, bez, ghg, gol
   1. region h:1-113 [97863]
9. 1ors
   part of anti-VD potassium channel KVAP Fab 33H1
   1. region b:1-118 [87351]
10. 1f8t
    part of anti-IL2 Fab LNKB-2
    1. region h:1-113 [59705]
11. 1ay1
    part of Fab TP7 against Taq DNA polymerase
    1. region h:1-115 [20243]
12. 1kcu
    part of anti-hepatitis B Fab pc287
    1. region h:1-116 [72311]
13. 1ru9
    part of cationic cyclization catalytic Fab 4C6
    complexed with 4ht, act, bez, ghg, gol
    1. region h:1-113 [97851]
14. 1f90
    part of anti-IL2 Fab LNKB-2
    1. region h:1-113 [59709]
15. 1kb9
    part of Fv against Rieske protein from the yeast cytochrome bc1 complex
    complexed with cdl, fes, hem, pcf, pef, pie, sma, umq, uq6
    1. chain j [77325]
16. 2ibz
    automatically matched to d1ezvx_
    complexed with fes, hem, sma, uq6
    1. region x:1-127 [137229]
17. 1ezv
    part of Fv against Rieske protein from the yeast cytochrome bc1 complex
    complexed with fes, hem, sma, uq6
    1. chain x [59554]
18. 1bgx
    part of Fab TP7 against Taq DNA polymerase
    1. region h:5-115 [20245]
19. 1cf8
    part of catalytic Fab HA-19A4 with a polyene cyclase activity
    complexed with cd, haz
    1. region h:1-113 [20379]
20. 1kc5
    part of anti-hepatitis B Fab pc287; complex with ps1 peptide
    1. region h:1-116 [72294]
21. 1kcs
    part of anti-hepatitis B Fab pc282; complex with ps1 peptide
    1. region h:1-116 [72307]
22. 1nd0
    part of cationic cyclization catalytic Fab 4C6
    complexed with dp4, so4
    1. region b:1-113 [85561]
    2. region d:1-113 [85565]
    3. region f:1-113 [85569]
    4. region h:1-113 [85573]
23. 1p84
    part of Fv against Rieske protein from the yeast cytochrome bc1 complex
    complexed with 3pe, 3ph, cdl, dbt, fes, hem, pc1, umq, uq6
    1. chain j [87864]
24. 3f58
    part of anti-gp120 (HIV-1) Fab 58.2
    mutant
    1. region h:1-113 [20353]
25. 2f58
    part of anti-gp120 (HIV-1) Fab 58.2
    complexed with arn
    1. region h:1-113 [20355]
26. 1baf
    part of Fab ANO2
    complexed with npp
    1. region h:1-115 [19779]
27. 1hq4
    part of catalytic Fab HA-19A4 with a polyene cyclase activity
    complexed with cd
    1. region b:1-113 [83623]
    2. region d:1-113 [83627]
28. 1kcr
    part of anti-hepatitis B Fab pc283; complex with ps1 peptide
    1. region h:1-116 [72303]
29. 1nsn
    part of Fab N10
    1. region h:1-114 [20071]
30. 1kyo
    part of Fv against Rieske protein from the yeast cytochrome bc1 complex
    complexed with fes, hem, m3l, sma
    1. chain j [73262]
    2. chain u [73277]
31. 1c12
    part of antibody directed against the musk odorant traseolide
    complexed with trz
    1. region b:301-413 [20381]
32. 32c2
    part of the cytochrome P450-arom activity suppressing Fab 32C2
    1. region b:1-119 [20439]
33. 1orq
    part of anti-VD potassium channel KVAP Fab 6E1
    complexed with cd, k; mutant
    1. region b:1-118 [87346]
34. 1ken
    part of Fab against influenza virus hemagglutinin
    complexed with man, nag
    1. region h:1-120 [72379]
    2. region t:1-120 [72383]
35. 2a0l
    automatically matched to d1orsb1
    complexed with k
    1. region d:1-116 [125957]
36. 2a0l
    automatically matched to d1orsb1
    complexed with k
    1. region f:1-116 [125959]
37. 1s5i
    MQ P18532 P01868 # natural 'chimera'
    1. region h:1-113 [105272]

Generated from scop database 1.73 with scopm 1.101 on Wed Nov 21 11:18:32 2007 Copyright © 1994-2007 The scop authors / scop@mrc-lmb.cam.ac.uk