Structural Classification of Proteins
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Superfamily: Nop10-like SnoRNP

Lineage:

  1. Root: scop
  2. Class: Small proteins [56992]
    Usually dominated by metal ligand, heme, and/or disulfide bridges
  3. Fold: Rubredoxin-like [57769]
    metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
  4. Superfamily: Nop10-like SnoRNP [144210]

Families:

  1. Nucleolar RNA-binding protein Nop10-like [144211] (3)
    Pfam 04135; contains N-terminal zinc-finger domain similar to the insert finger of the Initiation factor eIF2 gamma subunit (75204)
    1. H/aca ribonucleoprotein complex subunit 3 [144212]
      lacks the zinc-binding site, mostly unstructured
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [144213] (2)
        1. 2aqa picpic
          1. region a:2-58 [127168] picpiclink
        2. 1y2y picpic
          automatically matched to 2AQA A:2-58
          1. region a:2-58 [122575] picpiclink
    2. Ribosome biogenesis protein Nop10 [144214]
      1. Archaeon Pyrococcus furiosus [TaxId: 2261] [144215] (2)
        1. 2ey4 picpicxrefxrefxrefxrefxrefxref
          complexed with zn
          1. region e:4-55 [132584] picpiclink
        2. 2ey4 picpicxrefxrefxrefxrefxrefxref
          automatically matched to 2EY4 E:4-55
          complexed with zn
          1. region f:4-55 [132585] picpiclink
      2. Archaeon Methanococcus jannaschii [TaxId: 2190] [144216] (2)
        1. 2apo picpicxrefxref
          automatically matched to 2AQC A:1-60
          complexed with k, zn
          1. region b:403-457 [127135] picpiclink
        2. 2aqc picpic
          complexed with zn
          1. region a:1-60 [127177] picpiclink
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MRC site Generated from scop database 1.73 with scopm 1.101 on Wed Nov 21 11:18:32 2007
Copyright © 1994-2007 The scop authors / scop@mrc-lmb.cam.ac.uk