Structural Classification of Proteins

Fold: RNA polymerase

Lineage:

Root: scop
Class: Low resolution protein structures [58117]
Not a true class
Fold: RNA polymerase [58180]

Superfamilies:

RNA polymerase [58181] (1)
1. RNA polymerase [58182] (2)
  1. DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits [58183]
    1. Thermus aquaticus [TaxId: 271] [58184] (3)
      1. 1l9u
        holoenzyme at 4 Angstrom resolution
        
        chain a [73748]
        chain b [73749]
        chain j [73754]
        chain k [73755]
        chain c [73750]
        chain l [73756]
        chain d [73751]
        chain m [73757]
        chain e [73752]
        chain n [73758]
        chain h [73753]
        chain q [73759]
      2. 1hqm
        
        chain a [45972]
        chain b [45973]
        chain c [45974]
        chain d [45975]
        chain e [45976]
      3. 1l9z
        holoenzyme/fork-junction promoter DNA complex at 6.5 Angstrom resolution
        
        chain a [73766]
        chain b [73767]
        chain c [73768]
        chain d [73769]
        chain e [73770]
        chain h [73771]
  2. Complete 12-subunit RNA polymerase II complex [90261]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [90262] (20)
      1. 2b63
        low resulution structure
        complexed with 5bu, mg, zn
        
        region g:1-79 [127925]
      2. 2b63
        low resulution structure
        complexed with 5bu, mg, zn
        
        region d:15-75 [127921]
      3. 2ja7
        automatically matched to 2B63 D:15-75
        complexed with bru, mg, tt, zn
        
        region d:15-75 [138194]
      4. 2ja7
        automatically matched to 2B63 D:15-75
        complexed with bru, mg, tt, zn
        
        region p:15-75 [138210]
      5. 1y1w
        
        chain a [116362]
        chain b [116363]
        chain c [116364]
        chain d [116365]
        chain e [116366]
        chain f [116367]
        chain g [116368]
        chain h [116369]
        chain i [116370]
        chain j [116371]
        chain k [116372]
        chain l [116373]
      6. 2b8k
        automatically matched to 2B63 D:15-75
        complexed with zn
        
        region d:15-75 [128080]
      7. 2ja5
        automatically matched to 2B63 D:15-75
        complexed with bru, mg, zn
        
        region d:15-75 [138162]
      8. 2ja8
        automatically matched to 2B63 D:15-75
        complexed with bru, mg, tt, zn
        
        region d:15-75 [138226]
      9. 1y1v
        
        chain a [116349]
        chain b [116350]
        chain c [116351]
        chain d [116352]
        chain e [116353]
        chain f [116354]
        chain g [116355]
        chain h [116356]
        chain i [116357]
        chain j [116358]
        chain k [116359]
        chain l [116360]
        chain s [116361]
      10. 1r9t
        
        chain a [111739]
        chain b [111740]
        chain c [111741]
        chain e [111742]
        chain f [111743]
        chain h [111744]
        chain i [111745]
        chain j [111746]
        chain k [111747]
        chain l [111748]
      11. 2ja6
        automatically matched to 2B63 D:15-75
        complexed with bru, mg, tt, zn
        
        region d:15-75 [138178]
      12. 1pqv
        complexed with transcription elongation factor S-II
        
        chain a [95028]
        chain b [95029]
        chain c [95030]
        chain d [95031]
        chain e [95032]
        chain f [95033]
        chain g [95034]
        chain h [95035]
        chain i [95036]
        chain j [95037]
        chain k [95038]
        chain l [95039]
        chain s [95040]
      13. 1wcm
        
        chain a [114510]
        chain b [114511]
        chain c [114512]
        chain d [114513]
        chain e [114514]
        chain f [114515]
        chain g [114516]
        chain h [114517]
        chain i [114518]
        chain j [114519]
        chain k [114520]
        chain l [114521]
      14. 1nt9
        
        chain a [86151]
        chain b [86152]
        chain c [86153]
        chain d [86154]
        chain e [86155]
        chain f [86156]
        chain g [86157]
        chain h [86158]
        chain i [86159]
        chain j [86160]
        chain k [86161]
        chain l [86162]
      15. 1y77
        
        chain a [116512]
        chain b [116513]
        chain c [116514]
        chain d [116515]
        chain e [116516]
        chain f [116517]
        chain g [116518]
        chain h [116519]
        chain i [116520]
        chain j [116521]
        chain k [116522]
        chain l [116523]
      16. 1y1y
        
        chain a [116376]
        chain b [116377]
        chain c [116378]
        chain d [116379]
        chain e [116380]
        chain f [116381]
        chain g [116382]
        chain h [116383]
        chain i [116384]
        chain j [116385]
        chain k [116386]
        chain l [116387]
        chain s [116388]
      17. 1sfo
        strand separated elongation complex
        
        chain a [98834]
        chain b [98835]
        chain c [98836]
        chain e [98837]
        chain f [98838]
        chain h [98839]
        chain i [98840]
        chain j [98841]
        chain k [98842]
        chain l [98843]
      18. 1nik
        
        chain a [85743]
        chain b [85744]
        chain c [85745]
        chain d [85746]
        chain e [85747]
        chain f [85748]
        chain g [85749]
        chain h [85750]
        chain i [85751]
        chain j [85752]
        chain k [85753]
        chain l [85754]
      19. 1r9s
        
        chain a [111729]
        chain b [111730]
        chain c [111731]
        chain e [111732]
        chain f [111733]
        chain h [111734]
        chain i [111735]
        chain j [111736]
        chain k [111737]
        chain l [111738]
      20. 1r5u
        complexed with transcription elongation factor TFIIB
        
        chain a [97105]
        chain b [97106]
        chain c [97107]
        chain e [97108]
        chain f [97109]